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Journal of Neuroscience Research

Wiley

Preprints posted in the last 90 days, ranked by how well they match Journal of Neuroscience Research's content profile, based on 27 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

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Longitudinal gray matter trajectories and cognitive performance during rehabilitation after moderate to severe traumatic brain injury: a longitudinal VBM pilot study

Jalal, R.; Yoon, J.; Ashley, J.; Ashley, M.; Griesbach, G.; Bartnik Olson, B.

2026-07-09 radiology and imaging 10.64898/2026.07.06.26357170 medRxiv
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Moderate-to-severe traumatic brain injury (msTBI) is recognized as a chronic and evolving neurological condition characterized by progressive structural brain changes and persistent cognitive impairment. While prior studies have demonstrated widespread atrophy following msTBI, less is known regarding the longitudinal trajectory of gray matter (GM) changes during recovery and post-rehabilitation. The current study used longitudinal voxel-based morphometry (VBM) to characterize GM volume changes over a period of 9 months, in individuals with msTBI relative to healthy controls (HC). Associations between regional GM volume and neuropsychological functioning were examined. Twenty-eight participants (14 msTBI, 14 HC) completed MRI and neuropsychological assessments across three timepoints spanning outpatient rehabilitation and follow-up. Longitudinal VBM analyses revealed significant group and time interactions within subcortical and limbic regions. Relative to HC, individuals with msTBI showed lower GM volume in these regions at baseline, with trajectories that converged toward HC values (right hippocampus) or increased relative to HC over the rehabilitation period (bilateral pulvinar), whereas the right amygdala and inferior cerebellar vermis remained persistently reduced. Significant longitudinal improvements in memory and psychomotor speed during the rehabilitation period were demonstrated in msTBI. Greater (preserved) GM volume within the right hippocampus, thalamus, and bilateral pulvinar was associated with better performance across measures of verbal memory, processing speed, executive functioning, and cognitive flexibility. These findings suggest that msTBI is associated with dynamic structural brain changes involving subcortical, limbic, and cerebellar networks, and that the rehabilitation period was accompanied by relative volumetric stabilization in these regions and by meaningful cognitive improvement.

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Repeated mild traumatic brain injury does not affect sleep or epileptiform activity one-month post-injury in a knock-in mouse model of Alzheimer's disease

Carriquiriborde, V.; Yue, J.; Cheng, W. H.; Yildirim, T.; Fan, J.; Tok, S.; Kelly, M.; Wellington, C. L.; Kent, B. A.

2026-07-28 neuroscience 10.64898/2026.07.24.740449 medRxiv
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Traumatic brain injuries (TBIs) are associated with increased risk of neurodegenerative disease, including Alzheimers disease (AD); however, the mechanisms by which TBI promotes AD pathogenesis remain poorly understood. It also remains unclear whether post-TBI sequelae, including sleep disturbances and seizures, play a role in driving disease progression. To investigate these relationships, we employed a translational approach using the Closed-Head Injury Model of Engineered Rotational Acceleration (CHIMERA) of repeated mild TBI (rmTBI) and an AD knock-in mouse model to assess sleep, power spectral density, epileptiform activity, and A{beta} pathology one month post-injury. RmTBI caused elevated neurofilament-light and glial fibrillary acidic protein, markers of neuronal damage. Sex differences were observed in acute injury outcomes, sleep measures, and A{beta} plaque size. Specifically, females exhibited longer recovery post-injury, higher mortality, decreased non-rapid eye movement sleep duration, and larger average plaque size than males at equivalent impact energy. These findings highlight the importance of including both sexes when establishing injury severity thresholds. Future studies should incorporate validated TBI biomarkers of neural injury to define equivalent injury parameters across sexes and examine the chronic effects of rmTBI on sleep, epileptiform activity and AD pathology.

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Astrocytic morphology in the Medial Habenula: sex differences and modulatory factors

Rodriguez-Cedres, C.; Sangroniz-Beltran, L.; Lopez, N.; Delgado-Martin, N.; Andueza-Peral, G.; Mugica-Susaeta, P.; Ospital, P.; Beriain, S.; Ceprian, M.; Egana-Huguet, J.; Piriz, J.; Ferreira, G.; Ducourneau, E. G.; Mato, S.; Soria-Gomez, E.

2026-07-02 neuroscience 10.64898/2026.06.29.735177 medRxiv
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The medial habenula (MHb) is an epithalamic structure involved in aversive processing and emotional regulation, notable for its marked cellular heterogeneity and high astrocyte density. This cellular composition suggests that astrocytes may play an important role in MHb structure and plasticity, potentially contributing to the regulation of emotional states. The aim of this study is to characterize sex-dependent astrocytic morphology in the MHb and determine how it is modulated by peripheral alterations and direct central manipulations. A high-fat diet (HFD) was used as a model of metabolic stress, and systemic lipopolysaccharide (LPS) administration was used to induce a peripheral inflammatory challenge. At the central level, a chemogenetic approach using Gi-DREADDs under the GFAP promoter allowed selective modulation of astrocytic intracellular signaling independently of peripheral influences. Preliminary results indicate sex-dependent morphological differences in MHb astrocytes across all these experimental conditions, supporting the idea that MHb astrocytes are sensitive to both peripheral and central disturbances and may represent a key cellular substrate linking body-brain interactions with emotional regulation.

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Headbutting goats self-inflict traumatic brain injury

Oyadeyi, A. S.; Smith, C.; Willeford, B.; Grissett-Hardwick, G.; Fizzano, K.; Robinson, W. E.; Sorace, A. G.; Osborne, A.; Samuel, S.; Campbell, I.; Srinivas, A.; McConathy, J. E.; Bartels, J.; Lapi, S.; Ackermans, N. L.

2026-07-01 neuroscience 10.64898/2026.06.26.734585 medRxiv
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Traumatic brain injury (TBI) is a characteristic feature of neurodegenerative diseases such as Alzheimers disease and chronic traumatic encephalopathy. Small animal models have been used to establish clinically relevant biomarkers of neuropathology, however, they show significant anatomical differences from humans and are affected by artificial experimental manipulations, making them often unsuitable for longitudinal study of repetitive mild TBI. Building on a previous study of neuropathology in headbutting bovids in the wild, this pilot study investigated whether freely headbutting domestic goats, which naturally engage in low-intensity, high-frequency head impacts, accumulate measurable biomarkers of neurodegeneration in cerebrospinal fluid (CSF) and brain tissue. Over a six-month period, three male goats (Capra hircus) were allowed to freely headbutt under continuous video surveillance. Monthly CSF samples were collected, and concentrations of key neurodegeneration biomarkers were measured via multiplex immunoassays, including amyloid {beta} ; peptides (A {beta} 40, A {beta} 42), total and phosphorylated tau (tTau and pTau), glial fibrillary acidic protein (GFAP), S100 calcium-binding protein B (S100B), and neurofilament M (NF-M). Postmortem immunohistochemistry was conducted on prefrontal cortical tissues using antibodies targeting pTau, GFAP, and S100B. Head impact kinematics were quantified using horn-mounted accelerometer and inclinometer sensors that recorded linear acceleration, rotational velocity, and head orientation during naturally occurring headbutting events. Several notable trends were observed. Phosphorylated tau as well as reactive astrocytes were detected in the brain tissue, mirrored by elevated GFAP detected in the CSF. PET TSPO was unsuccessful, however, FDG PET revealed frontal-dominant activity in all goats, and one with asymmetrical activation. Overall, the goats sustained 5,000-7,000 head impacts each over six months, with forces up to 388 N and peak acceleration up to 16.5 g. This multi-modal observational study is the first to characterize neurodegeneration biomarkers and kinematics in headbutting goats. Even at one year old, the combination of pTau and gliosis in both the brain tissue and CSF indicates that the goat s repetitive head impacts begin to show neurodegenerative consequences early in life. Likely, the severity of these consequences increases with headbutts and age, eventually resulting in chronic neurodegeneration. This system shows promise as a large-animal model for the longitudinal study of the onset and progression of neurodegenerative disease.

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Evaluating Approaches for Inference Testing of Whole-Brain Densely Sampled Single-Subject Task fMRI Data

Medina, M. C.; Reddy, N. A.; Bright, M. G.; Sitek, K. R.

2026-06-30 bioengineering 10.64898/2026.06.29.735344 medRxiv
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Task-based precision mapping has become a promising technique in functional MRI (fMRI) to robustly characterize and map an individuals unique activity patterns. These experiments consist of acquiring extensive imaging data in one participant, ultimately improving the sensitivity and specificity of individual-specific functional localization. Despite its advantages, studies have primarily focused on understanding individual-specific cortical activation, preventing a holistic view of a systems-level functional response, and to date, best approaches for the statistical analysis of controlled task-based, densely sampled, whole-brain data have not yet been fully established. Therefore, in this study, we collected whole-brain (i.e. covering cortex, cerebellum, and brainstem) multi-echo densely sampled data of the auditory system, a system with major subcortical components, and evaluated activation sensitivity as well as activation stability across data subsets of commonly-used whole-brain and region-specific inference testing approaches. The whole-brain approaches involved standard voxel-level and cluster-level inference schemes with varying statistical thresholds and a non-parametric permutation inference approach. The region-specific approaches involved an exploratory top % t-statistics methods and non-parametric permutation inference approaches. We found that a whole-brain voxel-level approach with a false discovery rate (FDR) correction (p<0.05) presented highest sensitivity across regions and subjects as well as most consistent detection of expected auditory regions, even with lower scan duration. In addition, we found that a region-specific top % t-statistic approach may be a useful exploratory functional localization tool and a complementary method to standard inference testing approaches.

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Distinct effects of different metabolic stress models on human-derived neuronal networks

Collo, L.; Voogd, E. J. H. F.; Parodi, G.; Levers, M. R.; Chiappalone, M.; Martinoia, S.; Hoffmejer, J.; Frega, M.

2026-06-11 bioengineering 10.64898/2026.06.09.731175 medRxiv
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Different in vitro models are widely used as experimental platforms to assess neuronal responses to metabolic stress and test potential treatments for patients with ischemic stroke. Results of those studies depend on the stress models used, and the link between cell viability-based readouts and electrophysiological activity remains poorly explored. We investigated the neuronal network activity of human-derived neuronal networks generated from human induced pluripotent stem cells (hiPSCs) under three commonly used metabolic stress models: hypoxia alone, oxygen and glucose deprivation (OGD), and hypoxia combined with different concentrations of glutamate. We aim to clarify the differences between three commonly used in vitro models, including the relation between microscopic and electrophysiological readouts. These conditions produced distinct effects on neuronal network activity. Hypoxia alone induced a progressive decline in activity over time. In contrast, OGD triggered a biphasic response, characterized by an early increase in activity followed by a decline. High concentration glutamate exposure under hypoxia also altered network dynamics, inducing a triphasic pattern consisting of a rapid activity decrease, a transient increase, and a subsequent decline. Across all these pathological conditions, neuronal activity progressively declined and converged toward network failure after prolonged hypoxia. Following reoxygenation, recovery was limited and condition-dependent: hypoxia alone, OGD, and high glutamate conditions showed limited recovery. On the other hand, low glutamate concentration was associated with good recovery. Microscopic assessment revealed that cellular viability was differentially affected across conditions. OGD was associated with the highest levels of cell death, whereas glutamate exposure, particularly at high concentrations, led to a marked reduction in synaptic puncta despite partial preservation of cell viability. These findings highlight that commonly used in vitro ischemia models induce distinct neuronal responses and highlight the importance of integrating electrophysiological and structural analyses to better characterize metabolic stress in human neuronal networks better.

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Social Isolation Alters Hippocampal miR-30e-5p Expression and Impairs Pattern Separation-Related Behaviour in Adult Mice

McDiarmid, A. H.; Kiemes, A.; Mandal, G.; Thuret, S.; Fernandes, C.

2026-06-29 neuroscience 10.64898/2026.06.24.734185 medRxiv
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Social isolation is commonly used to model social stress and is a known risk factor for depression, with impacts on hippocampal function and postnatal neurogenesis. However, most studies focus on social isolation in juvenile mice isolation during adolescence, leaving the effects of prolonged adult isolation less understood. Post-transcriptional regulation of gene expression by microRNAs (miRNAs) plays a role in hippocampal function, and altered miRNA, as well as gene expression, has been reported in the hippocampus of mice exposed to social isolation. A single-nucleotide polymorphism in miR-30e in humans is associated with increased expression of the mature miRNA, impaired cognition, electroencephalogram waveform latency, depression, and schizophrenia. We investigated whether adult isolation in mice alters gene regulation via microRNAs, particularly miR-30e-5p, and affects hippocampal function. In adult BALB/c male mice, 10 weeks of isolation increased miR-30e-5p expression in the ventral hippocampus, reduced its target gene Neurod1, and impaired hippocampal-dependent cognition (object pattern separation), without clear anxiety- or depression-like behaviours. Isolated mice also showed a blunted response to acute stress. These findings suggest that adult social isolation affects hippocampal function through post-transcriptional gene regulation, highlighting a role for miR-30e-5p in neurogenesis and cognition in response to psychological stress.

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Pediatric traumatic brain injury elicits acute neuroinflammation and long-term changes in social, cognitive, and decision-making behaviors in male and female rats

Smail, M. A.; McDonald, M. Y.; Boland, R.; Breach, M. R.; Dye, C. N.; McCloskey, J. E.; Martens, K. M.; Walters, A. E.; Zaleta Lastra, A.; Roush, J.; Yeung, E.; Weinstein, A.; Gorman-Sandler, E.; Vonder Haar, C.; Kokiko-Cochran, O. N.; Lenz, K. M.

2026-07-15 neuroscience 10.64898/2026.07.09.737495 medRxiv
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Traumatic brain injury (TBI) is one of the leading causes of emergency room visits in children under 10. Children are potentially more vulnerable to the adverse effects of TBI, given that their brains are still developing at the time of injury. Indeed, early life TBI has been linked to cognitive, social, and mood-related impairments later in life. The neuroimmune system has been implicated in adult TBI mechanisms and plays numerous key roles in brain development, making it an interesting candidate for linking pediatric TBI and prolonged behavioral alterations. Here we establish a rat model of mild pediatric TBI to investigate the relationship between early life TBI, acute responses of neuroimmune cells, and chronic behavioral dysregulation. At postnatal day 15, which is roughly equivalent to toddler age, male and female rat pups received a TBI via lateral fluid percussion injury. At 3 days post injury, TBI increased microglia and astrocyte coverage locally in the Perilesional Cortex but not in more distant corticolimbic regions. However, the hippocampus and prefrontal cortex did exhibit increased expression of the phagocytic marker CD68 in microglia, suggesting widespread glial activation even in the absence of gross coverage change. TBI also impacted mast cells, early-response innate immune cells, increasing their number and degranulation in multiple regions. In the juvenile and early adult periods, TBI impaired cognitive function, reduced sociability, and increased avoidance, with no change in anxiety-like behavior. Later in adulthood, TBI continued to impact cognitive behavior, increasing risky decision-making and impairing optimization months after injury. Together, these results suggest that pediatric TBI causes lasting cognitive and social dysregulation, possibly via acute neuroimmune alterations following injury at a critical period of brain development.

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Acute Increase of Excitatory Activity in Pyramidal Neurons of Rat Motor Cortex under Static Magnetic Field

Klein, R. C.; Goetz, S. M.; Liedtke, W.; Moore, S. D.; Peterchev, A. V.

2026-07-22 bioengineering 10.64898/2026.07.20.739680 medRxiv
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ObjectivesTranscranial application of a static magnetic field (SMF) was reported to result in subsequent modulation of neural excitability in the human motor cortex, but the acute mechanisms underlying this effect are unknown. We explore the mechanisms of this phenomenon with patch-clamp recording in rat brain slices during SMF exposure. Materials and MethodsPatch-clamp recording from layer II/III pyramidal neurons in motor cortex of acutely prepared brain slices were conducted during exposure to 0.20-0.35 T SMF or sham. ResultsDuring SMF exposure we observed an increase in the frequency of spontaneous excitatory postsynaptic currents (sEPSCs) as well as miniature excitatory post-synaptic currents (mEPSCs) recorded in the presence of TTX to suppress action potentials and thus also network effects. There was a significant acute increase in sEPSC frequency for SMF exposure duration of both 6 min and 10 min, but not for 10 min sham exposure. After SMF exposure, the sEPSC and mEPSC frequency returned to baseline. The frequency of spontaneous inhibitory postsynaptic currents (sIPSCs) was unaffected by SMF. The amplitude of the postsynaptic currents decreased with time for all recordings regardless of the condition, presumably due to the expected gradual deterioration of the patch clamp seal. ConclusionsThe acute effect of SMF exposure on sEPSC and mEPSC frequency, but not amplitude, is consistent with the assumption of a presynaptic or synaptic site mediating the effect. Furthermore, the consistency of the effect between sEPSCs and mEPSCs suggests that the effect is not related to action potential propagation in the presynaptic axon. The effect of SMF on EPSCs and not IPSCs may be related to the larger length of excitatory axons compared to inhibitory axons, or to effects on extracellular ionic gradients within the slice.

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Reproducible transversal mouse brain sections using low-cost 3D printable resin matrix

Falcon, K.; Bisbal Lopez, A.; Thammakhoune, R.; Ayim, H.; Jung, M. C.; Krishna, A.; Aragon, C. C.; Kieffer, A. C.; Tay, T. L.

2026-07-30 neuroscience 10.64898/2026.07.27.741057 medRxiv
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Rodent brain matrices that produce coronal or sagittal brain sections for histology confer reproducibility and enable high throughput processing of tissues. However, a stainless steel or acrylic brain matrix that produces tissue sections in a transversal (or horizontal) orientation is currently unavailable as a standard tool. This limits the direct comparison of bilateral brain hemispheres within a single histological section, as freehand trimming to obtain horizontal planes is not easily replicable across samples. To mitigate this challenge, we designed a low-cost (USD 7 per unit), 3D-printed resin-based transverse brain matrix that accommodates mouse brains ranging from 12 to 16 mm in length from the olfactory bulb to the brainstem. Our matrix reproducibly generates horizontal tissue sections with a minimum of 1-mm-thickness without causing visible tissue deformation, which is comparable to the performance of commercial rodent brain matrices. Users may adapt the accompanying CAD code using our video tutorials to customize the transverse brain matrix for their specific needs, including alternative brain size, shape, and tissue thickness.

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Early retinal microglial activation and ganglion cell dysfunction following severe traumatic brain injury in mice

Pentek, L.; Czeiter, E.; Amrein, K.; Szentivanyi, A.; Kovacs, B.; Balogh, B.; Szarka, G.; Volgyi, B.; Kovacs-Oller, T.

2026-07-01 neuroscience 10.64898/2026.06.26.734783 medRxiv
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Traumatic brain injury (TBI) induces rapid neuroinflammatory responses not only in the brain but also in anatomically and immunologically connected central nervous system (CNS) compartments, including the retina. In our study, we investigated retinal microglial activation, retinal ganglion cell (RGC) calcium dynamics, and caspase-3 activation in adult mice subjected to severe traumatic brain injury using the Marmarou impact-acceleration model at 24 and 48 h post-injury. Carrying out Ca{superscript 2}-imaging, immunohistochemistry, and ex vivo time-lapse microscopy, we found robust microglial activation in both the superficial and deep retinal layers following TBI, accompanied by increased microglial motility. RGCs exhibited a transient surge in degeneration-induced spontaneous activity at 24 h, followed by a marked reduction below control levels at 48 h, consistent with early degenerative changes. Activated caspase-3 levels were significantly elevated in both microglia and other retinal cell types at both time points, indicating ongoing apoptotic effects. Together, these findings demonstrate that TBI rapidly triggers inflammatory and apoptotic mechanisms in the retina, which are detectable within the first 48 hours. Our results highlight the retina as a sensitive indicator of early CNS pathology after traumatic injury and underscore the potential of retinal analysis for monitoring TBI-induced neurodegeneration for future clinical implementation. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=78 SRC="FIGDIR/small/734783v1_ufig1.gif" ALT="Figure 1"> View larger version (14K): org.highwire.dtl.DTLVardef@5bc694org.highwire.dtl.DTLVardef@14a4ce4org.highwire.dtl.DTLVardef@fe2d32org.highwire.dtl.DTLVardef@149419d_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Whole-Brain, Region-Specific Astrocyte Reactivity and Morphological Remodeling After Diffuse Traumatic Brain Injury in A Gyrencephalic Ferret Model

Bagherian, A.; Perez, C.; Kosub, A.; Chalijah Ysabelle Gonzales, R.; Patterson, A.; Bieniek, K. F.; Seidi, M.; Memar, M.

2026-07-21 neuroscience 10.64898/2026.07.16.739056 medRxiv
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Traumatic brain injury (TBI) triggers pathological cascades that evolve across acute, subacute, and chronic phases. Astrocytes play a central role across these phases, and astrocyte reactivity is commonly evaluated using glial fibrillary acidic protein (GFAP) immunolabeling. However, in many TBI studies GFAP changes are characterized qualitatively or with manual or simple threshold-based measures on a small set of sections, limiting throughput and constraining analysis of region-specific heterogeneity in astrocyte responses. To overcome these limitations, we employed a ferret model of diffuse TBI (5 TBI, 5 sham), leveraging the ferrets gyrencephalic cortex, human-like regional fractional brain volumes, and astrocyte features that more closely resemble the human brain than rodent models. An AI-driven segmentation model validated for GFAP-stained ferret histology was integrated with atlas-based mapping to achieve whole-brain, region-resolved quantification of astrocyte reactivity over an average of 10 coronal slices per animal. Morphometric analysis using a custom SMorph-based pipeline characterized branching complexity and spatial domain features across defined regions. At seven days post-injury, TBI animals showed elevated astrocyte reactivity and hypertrophic remodeling, with significant expansion of convex hull area and elongation of secondary branches at the whole-brain level, most pronounced in the atlas-defined gray-matter region and cerebellum and brain-stem subregions, whereas white-matter showed a similar but less marked trend. Morphological changes were also detected in the hippocampus that did not show significant increases in astrocyte reactivity, indicating that structural remodeling represents a partially independent dimension of the astroglial response. These regional patterns are consistent with expected large tissue deformation and axonal strain in brainstem-cerebellar pathways and gray-matter at gray-white junctions in sagittal rotation, motivating future computational studies to quantify these links more directly. By combining region-resolved GFAP mapping with large-scale morphometry, this work provides a scalable framework for region-specific astrocyte mapping to support future multimodal, computational, and targeted neuroprotective studies.

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Olfactory Memory Dysfunction in Patients with Traumatic Brain Injury

Albers, A. D.; Jobin, B.; Rovito, C. A.; Tseng, V.; Marshall, A.; Boudreau, N.; Daneshvar, D. H.; Zafonte, R.; Albers, M. W.

2026-07-14 neurology 10.64898/2026.07.10.26357761 medRxiv
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Traumatic brain injury (TBI) severity is typically classified using clinical indices that may have limited prognostic value. Objective measures of olfactory function depend on sensory, limbic, and memory networks and may provide a more specific marker of injury-related neural dysfunction. Seventy-nine individuals with TBI (48 mild, 31 moderate-to-severe) and 59 healthy controls completed an olfactory battery, including tests of odor percept identification (OPID9, OPID18), odor discrimination (OD10), and odor memory (POEM) ~4.04 (4.45) years after their most recent TBI. General linear models examined associations between olfactory outcomes and TBI severity, adjusting for age, age, sex, and education. Additional models examined the relationship between loss of consciousness (LOC) and olfactory functioning. The severity of the most recent TBI was significantly associated with all olfactory outcomes, after adjusting for age, sex, and education. Compared with controls, participants with moderate-to-severe TBI showed lower OPID9, OPID18, POEM, and OD10 performance, while participants with mild TBI showed lower OPID18 and POEM performance. LOC was associated specifically with odor memory in these models, as participants with prolonged (> 30min) LOC or LOC of unknown duration had lower POEM scores than those with no LOC. In TBI-only models, LOC remained associated with POEM after adjustment for TBI severity, whereas TBI severity was not associated with POEM after LOC was included. Long term olfactory functioning is sensitive to TBI severity, with generalized impairments across odor identification, discrimination, and odor memory. LOC characteristics appear especially relevant to odor memory, suggesting that olfactory memory may capture injury-related features beyond TBI severity classification alone.

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Sport-Related Concussion in Adolescent Athletes is Associated with Acute White Matter Alterations, Delayed Network Changes, and Individual-Level Injury Patterns

Castro, E. V.; Haider, M. N.; Schweser, F.; Leddy, J. J.; Miecznikowski, J. C.; Muldoon, S. F.

2026-08-11 neuroscience 10.64898/2026.08.05.743045 medRxiv
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Sport-related concussions (SRC) are heterogenous injuries that produce a variety of symptoms and recovery trajectories. This heterogenous nature and focus on group-level analyses in current literature may obscure individual level results that could better inform clinical SRC management. In a prospective case-control study, we used diffusion magnetic resonance imaging (dMRI) to quantify longitudinal, whole-brain microstructural white matter changes reflecting axonal injury and inflammation and structural network-level alterations following SRC in adolescent athletes. Differential tractography assessed individual white matter track changes from acute injury to clinical recovery on an individual level. Acutely after SRC, but not after recovery, concussed adolescents demonstrated increased (i) quantitative anisotropy, (ii) restricted diffusion imaging, and (iii) isotropy, indicating increased microstructural disruptions early after injury. At the network level, differences were seen not acutely but after clinical recovery: whole brain network structure was more similar with reduced capacity for information spread among the concussed adolescents compared with controls. At the individual level, consistent patterns of damaged white matter tracks persisted in the concussed males but not in the concussed females. These results indicate that adolescent athlete brains are impacted acutely at the microstructural level following SRC, but that macroscale network disruptions appear after microstructure damage resolution, and they can persist beyond clinical recovery. Sex differences in the brains microstructural response to SRC, highlight the need for future research to include individualized and sex-stratified analyses to guide targeted SRC management.

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Rotating a petavoxel reconstruction exposes the viewing-angle bias inherent to Golgi-Cox and confocal dendritic-spine classification

Manjarrez, E.; Hernandez, S. T.; Zamora-Ursulo, M. A.; Flores, A.

2026-06-19 neuroscience 10.64898/2026.06.15.732500 medRxiv
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Dendritic spines are the principal postsynaptic sites of excitatory transmission. For over a century, their shape has been sorted into discrete categories such as filopodia, thin, long thin, stubby, mushroom, and branched, largely by Golgi-Cox impregnation and, more recently, confocal microscopy. However, both approaches share a fundamental limitation. The histological sectioning and single-viewpoint imaging that these methods rely on cannot control the orientation of a spine relative to the observer. Because a spine is a three-dimensional object, the projection seen depends on how its parent dendrite lies within the section. Here, using the publicly available H01 petavoxel reconstruction of human temporal cortex imaged by serial-section electron microscopy (EM), we show that spine-shape classification depends strongly on viewing angle. A total of 445 spines on layer 4 basal dendrites of five pyramidal neurons were classified from an initial viewpoint (Angle 1), then reclassified after rotation in Neuroglancer (Angle 2). Only 20.9% kept their category, so chance-corrected agreement was negligible (Cohens kappa = 0.027). These observations provide direct evidence that the rigid Golgi-Cox and confocal taxonomies conflate true spine morphology with the arbitrary angle of view. Our results, therefore, support recasting spine shape as a three-dimensional continuum, measurable in petavoxel reconstructions such as H01 through free rotation in Neuroglancer. Significance statementThe classification of dendritic spines into discrete shape classes underpins a vast literature on synaptic plasticity, development, and disease. Yet it rests on two-dimensional images whose viewing angle is not controlled. By rotating the same human spines in a nanoscale EM reconstruction, this study shows that four out of five spines change category with viewpoint alone. The finding exposes a systematic bias in Golgi-Cox and confocal classifications. It argues that spine morphology should be treated as a measurable three-dimensional continuum rather than a set of fixed labels.

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Tau Isoform Expression Drives Disease Outcomes Following a Single Closed Head Injury

Furhang, R.; Morrone, R.; Nikulina, E.; Jere, M.; Kaur, A.; Nayab, F.; Saito, T.; Sado, T. C.; Bergold, P.

2026-07-13 neuroscience 10.64898/2026.07.08.737276 medRxiv
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Tau protein has been implicated as an important mediator of traumatic brain injury (TBI). Adult human brain expresses 6 tau isoforms expressing 3 (3R) or 4 (4R) microtubule binding sites; adult mouse brain expresses only 4R tau. A role for tau isoform expression on TBI disease course is tested using wild-type C57/BL6 mice (WT) and C57/BL6 with a knocked-in human tau coding region (MAPTKI). Uninjured WT and MAPTKI mice have similar brain histology and behavior as they age. At subacute times (14 days post-injury (DPI)), injured MAPTKI mice have less white matter damage with similar neuronal loss as WT. At chronic times (90DPI), MAPTKI mice demyelinate while WT mice remyelinate. At 14DPI, tau phosphorylation differs between WT and MAPTKI mice. At 90DPI, thioflavin-S+ protein aggregates in MAPTKI corpus callosum are higher than WT. At 14 or 90DPI, WT and MAPTKI mice acquire Barnes maze, WT retention is impaired at 14DPI and MAPTKI retention impaired at 90DPI. At 14DPI, only MAPTKI mice acquire and retain active place avoidance; at 90DPI, only WT mice acquire active place avoidance. At 14DPI, only injured MAPTKI mice acquire alternating T-maze. These data suggest that WT and MAPTKI differ in both subacute and chronic disease course. At 14DPI, WT mice have greater white matter damage and behavioral impairments than MAPTKI mice. At 90DPI, impairments in WT mice partially recover, yet worsen in MAPTKI mice. This data suggests that 3R tau isoform expression alters the disease course of head injury. HighlightsPost-injury disease course of MAPTKI mice expressing 3R and 4R tau differs from wild-type mice expressing only 4R tau. At subacute times post-injury, MAPTKI mice have less white matter, yet similar gray matter, injury than wild-type mice. At chronic times post-injury, white matter damage in MAPTKI worsens. At subacute times post-injury, MAPTKI mice have fewer behavioral deficits than wild type mice. At chronic times post-injury, MAPTKI mice develop behavioral deficits not present at subacute times.

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Mice in the Robbers Cave: Induction of intergroup conflict in mice using the competitive Tsunahiki task

Nakata, M.; Fukai, N.; Iwabuchi, R.; Muroyama, H.; Carson, J.; Pun, Y. Y.

2026-08-20 animal behavior and cognition 10.64898/2026.08.09.743721 medRxiv
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Intergroup conflict is one of the most significant issues in human society. In the 1950s, Sherif et al. reported that intergroup conflict could be artificially induced in boys through intergroup competition with tug-of-war and ball games. Since this iconic study, researchers have developed various experimental methods to replicate intergroup competition and/or conflicts. However, although intergroup conflicts in wild animals are often reported, it has been difficult to establish a situation of intergroup conflict in laboratory rodents that is discriminable from aggressive behavior individually. In this study, we established a novel experimental paradigm for intergroup competition in mice in which the members of each group shared objectives and tasks. Adult male ICR/Jcl mice were housed in groups of six, divided into two teams of three and repeatedly performed a competitive Tsunahiki task (tsunahiki means tug-of-war in Japanese). The competitive Tsunahiki task was conducted in an open field divided into two experimental fields, with three ropes stuck to a wall separating the fields. The mice were required to pull two ropes out faster than their opponent team to win, and only the winners could proceed to the reward area separated by a guillotine door. We demonstrated that the experience of the competitive Tsunahiki task induced attack bites selectively toward members of the other team (out-group members). Our findings suggest that intergroup competition induces intergroup conflict in mice, providing a technical breakthrough in elucidating the detailed neuroscientific mechanisms underlying intergroup conflict.

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The pERKs of Temporal Order Memory in mice

D'hers, S.; Ojea Ramos, S.; Robles, A.; Feld, M.

2026-07-03 neuroscience 10.64898/2026.07.02.736134 medRxiv
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Temporal Order Memory (TOM), the ability to discriminate between events according to when they occurred, is a key component of episodic-like memory. Understanding the molecular mechanisms that support temporal memory requires behavioral approaches capable of capturing the continuous dynamics of natural exploration. Despite extensive evidence implicating the prefrontal cortex (PFC) in temporal memory, the intracellular signaling mechanisms supporting temporal order discrimination remain poorly understood. Here, we combined high-resolution automated behavioral phenotyping with molecular analyses to characterize the behavioral and signaling dynamics underlying TOM in mice. Mice were trained in a spontaneous object-recognition TOM task and tested after short-term (3 h) or long-term (24 h) retention intervals. Exploration was quantified using an artificial intelligence-based behavioral analysis pipeline that enables continuous and unbiased assessment of object exploration. Phosphorylation of extracellular signal-regulated kinase 2 (ERK2) and expression of the ERK phosphatase MKP3/DUSP6 were analyzed in the PFC and hippocampus (HIP) following habituation, a single training session, or two sequential training sessions. Additionally, a Temporal Novel Object Recognition (TeNOR) protocol was used to evaluate the integrity of memory traces. Mice displayed robust TOM performance across sexes and retention intervals. Molecular analyses revealed no significant changes in hippocampal ERK signaling, whereas the cytosolic fraction of the PFC exhibited dynamic, experience-dependent modulation of ERK2 phosphorylation. A single 15-minute training session induced a transient increase in ERK2 activation, while a second session 45 minutes later actively suppressed this peak. This rapid molecular reset was accompanied by increased MKP3 expression, suggesting the targeted recruitment of an active regulatory feedback mechanism. Continuous behavioral tracking further revealed temporal features of memory expression that were not captured by conventional summary measures; it identified an early, rapid decay of discrimination for older object memories in the TeNOR task, suggesting that TOM performance relies on resolving competitive retrieval between co-existing memory traces. Together, these findings identify dynamic ERK2-MKP3 signaling in the PFC as the molecular substrate upon which temporal discrimination can take place, and demonstrate how high-resolution phenotyping in naturalistic behavioral paradigms can reveal mechanistic links between intracellular signaling and the temporal organization of experience.

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Ferulic acid eicosyl ester enhances cognitive flexibility and modulates arousal-related neural circuits in mice

Mayer, D.; Hassan, I.; Taskaya, F.; Chowdhury, A.; Kahl, E.; Endres, T.; Lessmann, V.; Gerber, B.; Fendt, M.

2026-07-20 neuroscience 10.64898/2026.07.20.739577 medRxiv
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Cognitive deficits are a major contributor to disability in numerous neuropsychiatric and neurodegenerative disorders, yet effective pharmacological treatments remain limited. Ferulic acid eicosyl ester (FAE-20), a natural constituent of the plant Rhodiola rosea, has previously been identified as an enhancer of simple forms of Pavlovian conditioning in flies, bees, and mice. Here, we investigated whether FAE-20 has further potential to enhance cognitive flexibility, working memory, or spatial learning in mice, and explored potential neurobiological mechanisms underlying such enhancement. Cognitive flexibility was assessed using the attentional set-shifting task (ASST). Subchronic FAE-20 treatment significantly improved ASST performance in both male and female young adult mice, indicating enhanced cognitive flexibility. In contrast, no effects were observed on spatial working memory, assessed by spontaneous alternations in the Y-maze, or on spatial learning in the Barnes maze in either young or aged mice. Notably, FAE-20 enabled spatial learning in the Barnes maze in a subgroup of aged mice that failed to learn the task under vehicle treatment. Histological analyses using c-Fos immunohistochemistry as a marker of neural activity and doublecortin expression and spine density as markers of hippocampal plasticity revealed sex-specific effects on components of the ascending arousal system. FAE-20 increased the activation of orexinergic neurons in the lateral hypothalamus of male mice, whereas it reduced the activity of cholinergic neurons in the laterodorsal tegmental nucleus of females. No effects were detected on hippocampal neurogenesis or dendritic spine density. These findings suggest that the cognitive effects of FAE-20 are selective, depending on the cognitive demands of the task and the baseline cognitive abilities of the animals, and may be mediated, at least in part, by modulation of arousal-related neural circuits. HighlightsO_LIFAE-20 enhanced cognitive flexibility in young adult mice C_LIO_LIEffects of FAE-20 were strongest in demanding cognitive tasks C_LIO_LIAged poor learners benefited from FAE-20 treatment C_LIO_LIFAE-20 activated hypothalamic orexin neurons in male mice C_LIO_LIFAE-20 modulated ascending arousal systems in a sex-specific manner C_LI

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Chronic Intermittent Ethanol Exposure Produces Sex- and Tissue-Specific Metabolomic Signatures Across the Gut-Liver Axis in Adult Mice

Pollak, J.; Cannady, R.; Wang, B.; Maldonado-Devincci, A. M.

2026-06-18 neuroscience 10.64898/2026.06.14.732186 medRxiv
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Alcohol misuse leads to a range of health complications and induces various metabolic perturbations that impacts multiple physiological systems, including the cardiovascular system, liver, and gut microbiota. However, limited research has been reported on these metabolic profile changes, particularly using models of alcohol dependence such as after chronic intermittent ethanol (CIE) vapor exposure. This study investigated CIE-induced metabolomic alterations of CIE were investigated using fecal, liver, and serum samples of adult male and female C57BL/6J mice following 72 hr withdrawal. Significant metabolite changes were observed in both fecal and liver extracts and these changes were sex-specific. Both liver and fecal metabolites had systematic changes, while blood serum influences were limited after CIE. Female fecal samples showed higher metabolite perturbations than male samples according to PCA studies. The female samples showed significant butyrate downregulation and acetate upregulation, which are critical microbial products as beneficial microbe cell energy sources and influence intestinal absorption in the host. In addition, the female fecal samples showed significant downregulation of branched-chain amino acids including leucine, isoleucine, and valine, while male samples showed downregulation of glucose and taurine, with upregulated phenylalanine and tyrosine. In contrast, in the liver study, phenylalanine and tyrosine were upregulated while taurine was downregulated in females. Both sexes showed downregulation of liver glycine and glucose. These data indicate that CIE induces sex-specific metabolic perturbations in the mouse liver and fecal metabolome, and have implications for guy disturbances and liver damage observed following alcohol dependence. This study provides potential targets for future examination of mechanisms and treatment approaches for alcohol dependence.